rs27649604 SNP Detail

Summary

• ID
  rs27649604
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:177934585 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAACATCCA GGCGCAGCAC
  TTCCACAAAG TGGTACCCAT GCCAGCCTGG ACCATAGTTT CTTCTAGATC TGAGGTGCAG
  GTCGGGAAGG AGGTGACTTT TCTCATGTCT ACTGTCAGTT TAGAACATTT GCAGCAGCCA
  AGTGCACAGG TATATTGTGT GTGAAGCAGA GCTCATGGTT CTCTGAGGCA GAAGGTGGCC
  R
  ACTCTGCTCC TCAGATGGCT GCTGCCCAGA GCAGTTGTCC ATTGGCATCA GTCTCCTTTA
  ACTTGTTAGC TGGAGAGGAA CAGAGTCCTG GCCTCCTTTC AGCTTTAATT CCAGTGGCTG
  GAGCAAGCCC TCTTGCCGGT TAGGGGTGGC CTGGCTGGAG CTCCATGCAG AGACAAATCA
  CTCCCTGTCT TGCTCTCTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37848625	NES08705035	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27649604					SNP	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37848625	NES08705035	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:177934585 () rs orientation: forward

Symbol	Name	Function Class
Phactr3	phosphatase and actin regulator 3	Intron
Rr572388	regulatory region 572388	1388 bp proximal