rs27649601 SNP Detail

Summary

• ID
  rs27649601
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:177934910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCCTCTT GCCGGTTAGG
  GGTGGCCTGG CTGGAGCTCC ATGCAGAGAC AAATCACTCC CTGTCTTGCT CTCTAGGGAC
  TCCTGATCTT AAAGAGAGCT GCCTGGTGAC AGAGAGATTG GGGGGGAGGG GCATTTGATG
  GCATGTCTAC TTTTATGGGA GAAGAGGTGA TAAGTGCACC CCGCTTCAGT TTAAAAGGAA
  Y
  CACCTCCAAT CCCATCTCTC AAGTACAGCT GCCTCCCCAG GGGATTTTCC AGAGTCCAGT
  TCTTGCCTAT CATAGAGGAG TGGGATACCT TTAATATCCA CATTCAGGTG CATATGGAAG
  GCCTTCCCCC TGCAGATCAT GTGAGACCAG TCCCCTACTT TCCTTTCCAT ATCCCCGACA
  ACACAGGCCT AGCAGGGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37848622	NES08705038	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27649601					SNP	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37848622	NES08705038	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:177934910 () rs orientation: forward

Symbol	Name	Function Class
Phactr3	phosphatase and actin regulator 3	Intron
Rr572388	regulatory region 572388	1063 bp proximal