rs27649599 SNP Detail

Summary

• ID
  rs27649599
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:177935204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATCCACAT TCAGGTGCAT
  ATGGAAGGCC TTCCCCCTGC AGATCATGTG AGACCAGTCC CCTACTTTCC TTTCCATATC
  CCCGACAACA CAGGCCTAGC AGGGAGAGCC TTTCCTCCGT GCCAGCCTTA GCTGATCAAT
  ATTTCTCTCC TCTTTCTAGA GAGATGCTGC CAGCCATGTT GGCTAAGATG CCGTTTGGTC
  R
  TGATGGCAGC TGGGGTTGTT GTTGGTGTTA GGTGCAGCTG GGAGCAGATC TAGGAAGGAT
  GGGCAAGTCT AGACACACCC TCTCTTGGCC AATTCATCTG AGCATCTTCT ATGTCCCCGG
  CCCAGTTTTG GGCCCTGAGG ATCAAGTGAT GAAGGCAGAT AGGGTTCTTT TCTCTCTTGG
  AGCCCATAGC TTAGGAATGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37848620	NES08705040	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27649599					SNP	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37848620	NES08705040	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:177935204 () rs orientation: forward

Symbol	Name	Function Class
Phactr3	phosphatase and actin regulator 3	Intron
Rr572388	regulatory region 572388	769 bp proximal
Tssr22173	transcription start site region 22173	1927 bp upstream