rs27649598 SNP Detail

Summary

• ID
  rs27649598
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:177935541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGATCAAG TGATGAAGGC
  AGATAGGGTT CTTTTCTCTC TTGGAGCCCA TAGCTTAGGA ATGCTACTGA CAACACACAG
  GACAGCAAGC AAATTACCAA GCAGGGCATG TGTTGTGCTG AGTACCACGA TCCTGAGCGT
  AATGACTCAC TCCACATAGC ATGGTAGCCC CCAGGGGGTG ACGCAGGAGC TGAGGTGTTT
  Y
  GAGAAGGAGC CAGCCATGCA GGGAGAAGAT GTGCTTGGCC ACAGAAGACA TGGACAGTAT
  CTGTGCATCA TTACCATAGT TGAGACAGCA TGGCTTCCCA CCACTTCCTG TACCCTCCTA
  TAACACAGCA TAAGGTCAAA TAAGACTAGG CACAAACCCT CATATCAAGT CTGGGTGAAG
  CAACCAAGTC GGAGGAAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	DBA/2J	KK/HlJ	MOLF/EiJ	WSB/EiJ
ss37848619	NES08705012	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	DBA/2J	KK/HlJ	MOLF/EiJ	WSB/EiJ
rs27649598					SNP	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37848619	NES08705012	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:177935541 () rs orientation: forward

Symbol	Name	Function Class
Phactr3	phosphatase and actin regulator 3	Intron
Rr572388	regulatory region 572388	432 bp proximal
Tssr22173	transcription start site region 22173	1590 bp upstream