rs27649593 SNP Detail

Summary

• ID
  rs27649593
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:177937561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTTTGAAA TCCATCGATT
  TGTTTCATGG CTCAGAACAG GCTCTGCACT GGTACAGAGG GCTCATGTAC TTGGAGGAGG
  ACATGATCTC TGAAGGTGTC CTGGGCATGA AATCTGTATC AGTCTAGTGG CATTGGTGGA
  TGTGTTCAAG TCTGCCCGAT TGCCCGAGTT TCTGCCTAAC TTCTGTGAGT GATGTAGGAA
  Y
  GACTTCTGAG ATCCGTGGCC ACAGTTGTGC GCTACACATT TTTCTTGGGC TTTAATTTAC
  ATGTTCAGGA GCTCTGAAGC AGGTTCACCA TATTTAGACT CCTCATGACT TCCGTGTGGA
  GTGCTTTCTC TGTGACAGTG AAATGAGTGA TCCCTTCTGT GTCTGACAAA CGTGTTTGCT
  CTGAGGTCCT TTGTGTCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37848614	NES08704959	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27649593					SNP	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37848614	NES08704959	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:177937561 () rs orientation: forward

Symbol	Name	Function Class
Phactr3	phosphatase and actin regulator 3	Intron
Rr572388	regulatory region 572388	1567 bp distal
Rr572389	regulatory region 572389	1419 bp proximal
Tssr22173	transcription start site region 22173	425 bp downstream