rs27649592 SNP Detail

Summary

• ID
  rs27649592
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:177937592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGAACAGG CTCTGCACTG
  GTACAGAGGG CTCATGTACT TGGAGGAGGA CATGATCTCT GAAGGTGTCC TGGGCATGAA
  ATCTGTATCA GTCTAGTGGC ATTGGTGGAT GTGTTCAAGT CTGCCCGATT GCCCGAGTTT
  CTGCCTAACT TCTGTGAGTG ATGTAGGAAC GACTTCTGAG ATCCGTGGCC ACAGTTGTGC
  S
  CTACACATTT TTCTTGGGCT TTAATTTACA TGTTCAGGAG CTCTGAAGCA GGTTCACCAT
  ATTTAGACTC CTCATGACTT CCGTGTGGAG TGCTTTCTCT GTGACAGTGA AATGAGTGAT
  CCCTTCTGTG TCTGACAAAC GTGTTTGCTC TGAGGTCCTT TGTGTCTGTA ACTGGGCCTT
  CTTCAACTTT CTTTGCCTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37848613	NES08725337	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27649592					SNP	C	C	G	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37848613	NES08725337	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:177937592 () rs orientation: forward

Symbol	Name	Function Class
Phactr3	phosphatase and actin regulator 3	Intron
Rr572388	regulatory region 572388	1598 bp distal
Rr572389	regulatory region 572389	1388 bp proximal
Tssr22173	transcription start site region 22173	456 bp downstream