rs27649591 SNP Detail

Summary

• ID
  rs27649591
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:177937633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCCTAACTT CTGTGAGTGA TGTAGGAACG ACTTCTGAGA
  TCCGTGGCCA CAGTTGTGCG CTACACATTT TTCTTGGGCT TTAATTTACA TGTTCAGGAG
  M
  TCTGAAGCAG GTTCACCATA TTTAGACTCC TCATGACTTC CGTGTGGAGT GCTTTCTCTG
  TGACAGTGAA ATGAGTGATC CCTTCTGTGT CTGACAAACG                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37848612	NES08725338	PERLEGEN	MM_PANEL2	f	SNP	C	A	C
SNP Consensus Information
SNP					Consensus Type	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27649591					SNP	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37848612	NES08725338	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:177937633 () rs orientation: forward

Symbol	Name	Function Class
Phactr3	phosphatase and actin regulator 3	Intron
Rr572388	regulatory region 572388	1639 bp distal
Rr572389	regulatory region 572389	1347 bp proximal
Tssr22173	transcription start site region 22173	497 bp downstream