rs27649444 SNP Detail

Summary

• ID
  rs27649444
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:177970032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGGGGTG TATGCCAGAC
  ACCTCTCACT GCACAGACCT GGGCAGAACT TTCAGGCGGC CACCATGGTG CAAAACATAA
  TCTTAGTGTT TTTCCGCAGA AGGCTGAGCC AGAGACCCGC CGTGGAGGAA CTGGAGAGAA
  GAAATATCCT GAAACGTGAG TAGCAGGAGA TTCCTCTAGA GGTTTCCCTC ACGTGTGCTA
  M
  GGCTGCTGCA GGAATCTGAG CTCTCACAGC CCAGCCCAGC TCTGCAGGTT CCTTTAATCT
  GAACAGCTAA GAGATTCTGA AAGAAAAACC TTAAAGTGAT TGTATTCAGA AAGCTCCTTC
  TAAAATGAAA TAAAAATAGC TCTCTTCCTA GCATAATTAA AGACACTCTT ATCTTCAGAT
  TAGCTGGACC TGTTGACCCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37848463	NES08704104	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27649444					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37848463	NES08704104	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:177970032 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12873	CpG island 12873	631 bp distal
Phactr3	phosphatase and actin regulator 3	Intron
Rr572391	regulatory region 572391	437 bp distal
Rr572392	regulatory region 572392	1268 bp proximal
Tssr22174	transcription start site region 22174	705 bp downstream
Tssr22175	transcription start site region 22175	672 bp downstream
Tssr22176	transcription start site region 22176	626 bp downstream
Tssr22177	transcription start site region 22177	556 bp downstream