rs27649438 SNP Detail

Summary

• ID
  rs27649438
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:177970486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGTTTGCA GTGGGATTCC
  TAAGGACATT AGAAATTTCA GACCCAGTCA CTTGTTCCAC CTAGGAGAAA TAAACAGCTG
  GCTCACTGGA GCAGGGAAAC TTCCGTGGCT CAGAACTTTG GATTCCAGCA CCCTCTGTAC
  CTCTGGCCTT GTTTCCCCAA TTAGGCGTGA ATCTGGAGTG TACTGAGCCC AGATGTCCAG
  Y
  AATAATGTCC ACTGTATGGA AGTTTCATGG TCTTGGATGA TGGAAGGTAG CCAACCCTCA
  GACGAGCCCT GAGTAGTGCC TGTCTACTAG GACTAGTTTT TAAAGTCTTT TTCCGCAAAA
  TGTGTTGGTC ATCCTTGGAT CAGTTCAGTG GTGTGACTCT TAAGCTTGTC CCTCGCTGTG
  TGTTGCACAC TCTACTTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37848457	NES08704114	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27649438					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37848457	NES08704114	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:177970486 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12873	CpG island 12873	1085 bp distal
Phactr3	phosphatase and actin regulator 3	Intron
Rr572391	regulatory region 572391	891 bp distal
Rr572392	regulatory region 572392	814 bp proximal
Tssr22174	transcription start site region 22174	1159 bp downstream
Tssr22175	transcription start site region 22175	1126 bp downstream
Tssr22176	transcription start site region 22176	1080 bp downstream
Tssr22177	transcription start site region 22177	1010 bp downstream