rs27649436 SNP Detail

Summary

• ID
  rs27649436
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:177970656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTGGAGTG TACTGAGCCC
  AGATGTCCAG CAATAATGTC CACTGTATGG AAGTTTCATG GTCTTGGATG ATGGAAGGTA
  GCCAACCCTC AGACGAGCCC TGAGTAGTGC CTGTCTACTA GGACTAGTTT TTAAAGTCTT
  TTTCCGCAAA ATGTGTTGGT CATCCTTGGA TCAGTTCAGT GGTGTGACTC TTAAGCTTGT
  Y
  CCTCGCTGTG TGTTGCACAC TCTACTTGCC TGAGTGTTCT TTGTTTGTGA TCATCTTTTT
  AAAAGTTGTA ACAGCACCAA GACTGACCTG GTTCTATCAG AGAGGCCAGA GAATCTTGAT
  TTGAACATGC AAGCAAACCC ATTCTTCTCT GTCTTAGCCT TAATACTATC CTTAGCCTTA
  AAACTACCTA CCCCCTCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37848455	NES08704117	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	C	C	C	C		C	C	T	C
ss148365090	ENSMUSSNP5420524	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27649436					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37848455	NES08704117	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:177970656 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12873	CpG island 12873	1255 bp distal
Phactr3	phosphatase and actin regulator 3	Intron
Rr572391	regulatory region 572391	1061 bp distal
Rr572392	regulatory region 572392	644 bp proximal
Tssr22174	transcription start site region 22174	1329 bp downstream
Tssr22175	transcription start site region 22175	1296 bp downstream
Tssr22176	transcription start site region 22176	1250 bp downstream
Tssr22177	transcription start site region 22177	1180 bp downstream