rs27649422 SNP Detail

Summary

• ID
  rs27649422
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:177971927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGTCAGTG CATCTGACAC
  ACACTCAGAA TTCTATGTAT TTATGGTCTA ATTGAATATG ATGACTGGGT TCAGTCTCTC
  TGTGTGTGTT CCTTAATGTT TACCACAAAT CTGAGAGTCG TGCTCTCATC CCCATTTTAC
  TATTGAAGCA GCTAAGGCCC TGAGGAAATG TGACATCTTT AACACATGAA CATTGGCCTG
  Y
  CTCTACTGGC TGCCAAGTTC TTAGTCACCA CATCAGAAGC AAACACACTT TCCTAGATAC
  CTATGGAAGC TGCACATGGA GCTATCCAAG GTGCTGGACT AATTTCCCCA AACTGTTTTT
  TTTTGTTTTT GTTTTTGTTT TGTTTTTTGT TTTTTTTTCT TTTTTGTTTG TTTGTTTTTT
  TAATATACCA TGGTAATGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37848441	NES08704031	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27649422					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37848441	NES08704031	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:177971927 () rs orientation: forward

Symbol	Name	Function Class
Phactr3	phosphatase and actin regulator 3	Intron
Rr572392	regulatory region 572392	277 bp distal