rs27649420 SNP Detail

Summary

• ID
  rs27649420
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:177972335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGGGGTG GGGTGGGTGG
  GGGGAATCCT GCTTTCTCCT TGGTCTTTTT ACAAGGAGAC TACATGTGGG GTTTGTCCAG
  GACCTTTGTA AGGAATCAGA ACTACTTCCA TGCCATAGCC TCAGCCTCTC AGGGCTGGCC
  TGATGACATT TTCAGGGTTT CCTGGTTGTT TCACTATTTT GTCACCATAA CTTACAACGA
  Y
  GCATTTTTTA TTACCACATA TGTCTGAAAA AACAAGCATA TGATGTGATT GTGTTTTTCT
  CTAAAATCCC CTAGTCTACT AGCTTTTAAA ATAAAAAGAC TATTGGAAAG CATACTCAGA
  TGTATTAAAC ACCCACATAG ACAGTTCCCC CAACACAGTA GTGTTTGAAA CATACCATTT
  AAATAAAACC ATAGAATGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37848439	NES08703992	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27649420					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37848439	NES08703992	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:177972335 () rs orientation: forward

Symbol	Name	Function Class
Phactr3	phosphatase and actin regulator 3	Intron
Rr572392	regulatory region 572392	685 bp distal