rs27649412 SNP Detail

Summary

• ID
  rs27649412
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:177972830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTTAAAG CTGACAACCT
  AAGGCTTTAT TTAGCACCTA GAATGCCAGA AATAGAACTA CATTCTTTTT TCTCTCTGAA
  ACCCTGGGCC AGGCTTACAT TACTACAATA TTTCAACATG CTGGCCTACT TTTAGTGGCC
  AAGTACAGTA TGAACACAAC CTATGAGGCA AAGTCAATTC TGAGGGTTGT TGGCCCCTTA
  K
  AAGGTAGTCA TGTCTATGCA TGCTTCCACA ATGGAAAAGC ACCTGGGTTG TAGGAATGTC
  CATATTTGAT ATTATGTTGC CCATCATTAG AAGTTCATGT TTTGAGGTAG TTGTCTAAAA
  GTTCCATTTT ACACACTTGT AAAACAGAAA GATAGAAAAC CAACTGTGAT GACAGTACCA
  CTCAGTGCTG AACACTGGCG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37848431	NES08704000	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27649412					SNP	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37848431	NES08704000	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:177972830 () rs orientation: forward

Symbol	Name	Function Class
Phactr3	phosphatase and actin regulator 3	Intron
Rr572392	regulatory region 572392	1180 bp distal