rs27649409 SNP Detail

Summary

• ID
  rs27649409
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:177973096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGATATTAT GTTGCCCATC
  ATTAGAAGTT CATGTTTTGA GGTAGTTGTC TAAAAGTTCC ATTTTACACA CTTGTAAAAC
  AGAAAGATAG AAAACCAACT GTGATGACAG TACCACTCAG TGCTGAACAC TGGCGTGATT
  GTCGTGCTAT GGAAACTATA TGTTCCATGT TTTCCTAGAT ATAAGTATAC AGAGAAGATA
  K
  TCAAGTGGCA TGGAGACCAA TAGACAGCTA TTCCACAGAA GCAAACAGTA GCAAAAATAT
  ACTTCTTCTG TATAAGGCAG AGACGAATTA GCCTGAAAAG GATGGTCATG TGTGACAGCT
  TAGGCCAGCA AGTTCTGAGG AGGTTTTGGG AAAGCAACTG CAAACACATA AACTGATATG
  TCAAATGGTG TCATCTGTAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37848428	NES08704003	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27649409					SNP	G	G	G	G	G	T	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37848428	NES08704003	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:177973096 () rs orientation: forward

Symbol	Name	Function Class
Phactr3	phosphatase and actin regulator 3	Intron
Rr572392	regulatory region 572392	1446 bp distal