rs27633020 SNP Detail

Summary

• ID
  rs27633020
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:144597741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTCT TGGTGCCAGC TTTTTTGTTT
  K
  TCATAGTTGG ATGGAGGGGC ACAGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37800160	NES09124376	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	G	G	G		T	G	G	G		G
ss45629528	mCV22759440	ABI	CRAMUS_MOUSE	f	SNP			T						G
ss147838825	ENSMUSSNP1683916	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						G
ss321410515	CHEV_4_144461074	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27633020					SNP	T	T	T	T	T	T	T	G	G	G	G	T	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37800160	NES09124376	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144597741 () rs orientation: forward

Symbol	Name	Function Class
Gm57096	predicted gene, 57096	within coordinates
Rr604241	regulatory region 604241	1646 bp proximal
Rr604242	regulatory region 604242	1962 bp proximal