rs27631563 SNP Detail

Summary

• ID
  rs27631563
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148083689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGATG TGGCTCAGAA CAGAAAAGCA
  R
  CAGCACTTGT CTGAGGCCAC CCGCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	MSM/Ms	NZW/LacJ	SM/J	WSB/EiJ
ss37806200	NES09108405	PERLEGEN	MM_PANEL2	f	SNP		A	A			A		A		G		G
ss45689397	mCV23435488	ABI	CRAMUS_MOUSE	f	SNP	G	A		A	G
ss147989362	ENSMUSSNP5406671	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A							G
ss321416323	CHEV_4_147373341	CHEVERUD	SCREENING_POP	f	SNP							G				G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	MSM/Ms	NZW/LacJ	SM/J	WSB/EiJ
rs27631563					SNP	G	A	A	A	G	A	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37806200	NES09108405	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148083689 () rs orientation: forward

Symbol	Name	Function Class
Gm13054	predicted gene 13054	1859 bp downstream
Nppa	natriuretic peptide type A	1490 bp upstream
Rr407043	regulatory region 407043	693 bp proximal
Rr604546	regulatory region 604546	1000 bp proximal
Tssr40239	transcription start site region 40239	1401 bp upstream
Tssr40240	transcription start site region 40240	1503 bp upstream
Tssr40241	transcription start site region 40241	1859 bp upstream