rs27631562 SNP Detail

Summary

• ID
  rs27631562
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148083806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCACTCCT GGGGCACTGG
  TCAGGATCAT AGCTCTCCTA GGGCCACATA GAGACTTCAG ATGTGGCTCA GAACAGAAAA
  GCAACAGCAC TTGTCTGAGG CCACCCGCCT CAGCCGTTCT TCAAGTCTTT GCCCAACTCA
  AAGACCATCT CCAGGAGGTA GGTCATGTGA CACACACAGC AAGGAGCCCG AGTTCCCCCA
  K
  TAGGGCTGCT CGCCTAGTCC TCTCTGCTAA TAATAATCCC CAGGCACACA ATTAAGCAGT
  GAGCGCATCC CAGGGACTCA TCCGGAGGCG ACAGTGTGAA CTTGCACAGA TTTCAGACTT
  CAAGGAGAGA TTGGCCAACC CAAATTGGTT GCCTACAACC CCCAGCTTTC TCAAAGGGCT
  CTCTTTTTCT ATCTTAGAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss37806199	NES09108407	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G		G	G		T
ss321416325	CHEV_4_147373458	CHEVERUD	SCREENING_POP	f	SNP					T			G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs27631562					SNP	G	G	G	G	T	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37806199	NES09108407	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148083806 () rs orientation: forward

Symbol	Name	Function Class
Gm13054	predicted gene 13054	1742 bp downstream
Nppa	natriuretic peptide type A	1373 bp upstream
Rr407043	regulatory region 407043	576 bp proximal
Rr604546	regulatory region 604546	883 bp proximal
Tssr40239	transcription start site region 40239	1284 bp upstream
Tssr40240	transcription start site region 40240	1386 bp upstream
Tssr40241	transcription start site region 40241	1742 bp upstream
Tssr40242	transcription start site region 40242	1976 bp upstream