rs27631561 SNP Detail

Summary

• ID
  rs27631561
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148084077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGACTCA TCCGGAGGCG
  ACAGTGTGAA CTTGCACAGA TTTCAGACTT CAAGGAGAGA TTGGCCAACC CAAATTGGTT
  GCCTACAACC CCCAGCTTTC TCAAAGGGCT CTCTTTTTCT ATCTTAGAGA AAACATCACC
  GCAGACACCT CTTGTGACTT CCAGCCACAT GACAACTCCA CCAGGCAGCC ACAGGGTCAA
  Y
  GGGCGTGGAA GTCTTCCAAT AGCCCATTAA GACGGTCAGA AAGCAGAGAG CAGCAGAAAA
  TGCACACACT TATCACACAC ACAAAGCATA CATATGTCGA AAATGGCTAC ACTGGGGTGT
  GGAGACCACT TGTTAAAGGT GGACTGCCTG CTCATGCTCC TGAGGCTGCC AGAAGAATTC
  ATGGCTCACT TCCTTGGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss37806198	NES09108409	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		T	T		C
ss321416326	CHEV_4_147373729	CHEVERUD	SCREENING_POP	f	SNP							C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs27631561					SNP	T	T	T	T	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37806198	NES09108409	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148084077 () rs orientation: forward

Symbol	Name	Function Class
Gm13054	predicted gene 13054	1471 bp downstream
Nppa	natriuretic peptide type A	1102 bp upstream
Rr407043	regulatory region 407043	305 bp proximal
Rr604546	regulatory region 604546	612 bp proximal
Rr604547	regulatory region 604547	1791 bp proximal
Tssr40239	transcription start site region 40239	1013 bp upstream
Tssr40240	transcription start site region 40240	1115 bp upstream
Tssr40241	transcription start site region 40241	1471 bp upstream
Tssr40242	transcription start site region 40242	1705 bp upstream