rs27631560 SNP Detail

Summary

• ID
  rs27631560
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148084142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACCCAAAT TGGTTGCCTA
  CAACCCCCAG CTTTCTCAAA GGGCTCTCTT TTTCTATCTT AGAGAAAACA TCACCGCAGA
  CACCTCTTGT GACTTCCAGC CACATGACAA CTCCACCAGG CAGCCACAGG GTCAATGGGC
  GTGGAAGTCT TCCAATAGCC CATTAAGACG GTCAGAAAGC AGAGAGCAGC AGAAAATGCA
  S
  ACACTTATCA CACACACAAA GCATACATAT GTCGAAAATG GCTACACTGG GGTGTGGAGA
  CCACTTGTTA AAGGTGGACT GCCTGCTCAT GCTCCTGAGG CTGCCAGAAG AATTCATGGC
  TCACTTCCTT GGTCTCAAAG GTCATGAAGG ACATTATGGA GAATGGTGTA TGTGTCCCCC
  CCTCAATCCC TTACCTCCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	MSM/Ms	NZW/LacJ	SM/J	WSB/EiJ
ss37806197	NES09108411	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C	C		C		C		G
ss147989373	ENSMUSSNP6868817	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C			C				G
ss321416327	CHEV_4_147373794	CHEVERUD	SCREENING_POP	f	SNP							G				C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	MSM/Ms	NZW/LacJ	SM/J	WSB/EiJ
rs27631560					SNP	C	C	C	C	C	C	G	C	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37806197	NES09108411	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148084142 () rs orientation: forward

Symbol	Name	Function Class
Gm13054	predicted gene 13054	1406 bp downstream
Nppa	natriuretic peptide type A	1037 bp upstream
Rr407043	regulatory region 407043	240 bp proximal
Rr604546	regulatory region 604546	547 bp proximal
Rr604547	regulatory region 604547	1726 bp proximal
Tssr40239	transcription start site region 40239	948 bp upstream
Tssr40240	transcription start site region 40240	1050 bp upstream
Tssr40241	transcription start site region 40241	1406 bp upstream
Tssr40242	transcription start site region 40242	1640 bp upstream