rs27631557 SNP Detail

Summary

• ID
  rs27631557
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148084680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGC CAGAGGTCCA CCCACGAGGC
  Y
  GATGAATCAG GTGTGAAGCT AGCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss37806194	NES09108416	PERLEGEN	MM_PANEL2	f	SNP		C	C	T		C		C	T		C	T		T
ss45633709	mCV23435761	ABI	CRAMUS_MOUSE	f	SNP	T	C			C		T
ss147989393	ENSMUSSNP2094486	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss321416332	CHEV_4_147374332	CHEVERUD	SCREENING_POP	f	SNP										T			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs27631557					SNP	T	C	C	T	C	C	T	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37806194	NES09108416	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148084680 () rs orientation: forward

Symbol	Name	Function Class
Gm13054	predicted gene 13054	868 bp downstream
Nppa	natriuretic peptide type A	499 bp upstream
Rr407043	regulatory region 407043	within coordinates
Rr604546	regulatory region 604546	9 bp proximal
Rr604547	regulatory region 604547	1188 bp proximal
Tssr40239	transcription start site region 40239	410 bp upstream
Tssr40240	transcription start site region 40240	512 bp upstream
Tssr40241	transcription start site region 40241	868 bp upstream
Tssr40242	transcription start site region 40242	1102 bp upstream
Tssr40243	transcription start site region 40243	1569 bp upstream
Tssr40244	transcription start site region 40244	1742 bp upstream
Tssr44568	transcription start site region 44568	1840 bp downstream