rs27631556 SNP Detail

Summary

• ID
  rs27631556
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148084687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAAAAAAAA ATAATAGCTC TTTCACCTGA CTGCTAACAG
  GGACATCTAG GGTGGGGGTG GGCTGTCTGG GGCCAGAGGT CCACCCACGA GGCCGATGAA
  K
  CAGGTGTGAA GCTAGCTCCA GCATGTGTAC TCCCTGGCCA GCCTAGCTGG CCTCCCAGCT
  GCCTGTCATT GCCTCCTCTC CCGCCCTTAT TTGGAGCCCC                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss37806193	NES09108418	PERLEGEN	MM_PANEL2	f	SNP	T	G	T	G	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs27631556					SNP	T	G	T	G	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37806193	NES09108418	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148084687 () rs orientation: forward

Symbol	Name	Function Class
Gm13054	predicted gene 13054	861 bp downstream
Nppa	natriuretic peptide type A	492 bp upstream
Rr407043	regulatory region 407043	within coordinates
Rr604546	regulatory region 604546	2 bp proximal
Rr604547	regulatory region 604547	1181 bp proximal
Tssr40239	transcription start site region 40239	403 bp upstream
Tssr40240	transcription start site region 40240	505 bp upstream
Tssr40241	transcription start site region 40241	861 bp upstream
Tssr40242	transcription start site region 40242	1095 bp upstream
Tssr40243	transcription start site region 40243	1562 bp upstream
Tssr40244	transcription start site region 40244	1735 bp upstream
Tssr44568	transcription start site region 44568	1833 bp downstream