rs27631554 SNP Detail

Summary

• ID
  rs27631554
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148085185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGG GGGGCTATAA AAACGGGAGA
  Y
  GCTGGCAGCT AGGAGACAGT GACGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss37806191	NES09108422	PERLEGEN	MM_PANEL2	f	SNP			T	T			T		T	C		C
ss45716291	mCV23435774	ABI	CRAMUS_MOUSE	f	SNP	C	C			T	C
ss147989407	ENSMUSSNP1670719	ENSEMBL	ENSEMBL_Sanger	f	SNP		C				C
ss321416334	CHEV_4_147374837	CHEVERUD	SCREENING_POP	f	SNP								C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs27631554					SNP	C	C	T	T	T	C	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37806191	NES09108422	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148085185 () rs orientation: forward

Symbol	Name	Function Class
Gm13054	predicted gene 13054	363 bp downstream
Nppa	natriuretic peptide type A	mRNA-UTR
Rr407043	regulatory region 407043	within coordinates
Rr604546	regulatory region 604546	within coordinates
Rr604547	regulatory region 604547	683 bp proximal
Tssr40239	transcription start site region 40239	87 bp downstream
Tssr40240	transcription start site region 40240	7 bp upstream
Tssr40241	transcription start site region 40241	363 bp upstream
Tssr40242	transcription start site region 40242	597 bp upstream
Tssr40243	transcription start site region 40243	1064 bp upstream
Tssr40244	transcription start site region 40244	1237 bp upstream
Tssr44568	transcription start site region 44568	1335 bp downstream