rs27631553 SNP Detail

Summary

• ID
  rs27631553
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148086412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATATTTTT CTCTTTGTAG
  TACCGAAGAT AACAGCCAAG GAGGAAAAGG CAGTCGATTC TGCTTGAGCA GATCGCAAAA
  GATCCTAAGC CCTTGTGGTG TGTCACGCAG CTTGGTCACA TTGCCACTGT GGCGTGGTGA
  ACACCCTCCT GGAGCTGCGG CTTCCTGCCT TCATCTATCA CGATCGATGT TAAATGTAGA
  Y
  GAGTGGTCTA GTGGGGTCTT GCCTCTCCCA CTCTGCATAT TAAGGTAGAT CCTCACCCTT
  TTCAGAAAGC AGTTGGAAAA AAAAAAAAAG AATAAACTTC AGCACCAAGG ACAGACGCCG
  AGGCCCTGAT GTGCTTCTTT GGCTTCTGCC CTCAGTTCTT TGCTCTCCCC AGCCTTGATC
  CCTCATTTCT CCCTCCTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37806190	NES09108424	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T		T	T	T		C
ss321416336	CHEV_4_147376064	CHEVERUD	SCREENING_POP	f	SNP								C				T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27631553					SNP	T	T	T	T	T	T	T	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37806190	NES09108424	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148086412 () rs orientation: forward

Symbol	Name	Function Class
Gm13054	predicted gene 13054	within coordinates
Nppa	natriuretic peptide type A	mRNA-UTR
Rr407043	regulatory region 407043	395 bp distal
Rr604546	regulatory region 604546	1223 bp distal
Rr604547	regulatory region 604547	234 bp distal
Tssr40239	transcription start site region 40239	1314 bp downstream
Tssr40240	transcription start site region 40240	1201 bp downstream
Tssr40241	transcription start site region 40241	844 bp downstream
Tssr40242	transcription start site region 40242	617 bp downstream
Tssr40243	transcription start site region 40243	151 bp downstream
Tssr40244	transcription start site region 40244	10 bp upstream
Tssr44568	transcription start site region 44568	108 bp downstream