rs27631552 SNP Detail

Summary

• ID
  rs27631552
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148086752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTCACGTCA TAGTCCTCAA AATGCTCTGC CTCCATCACA
  GAACCCGGGA AAGTCCACCC AGGCTGAAAA GGGCATTTAT TTTTAATTCA TGAAAAGGGA
  R
  CACGAACACA CCTTTTCCTG AGGACAGGTA ATGACATCTC TGCTCAGAAG TTTCAAGCAT
  TCCTTTCTGG TTAGAGCCTG GGTGGCTTTA AGGGGCATTT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss37806189	NES09108426	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs27631552					SNP	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37806189	NES09108426	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148086752 () rs orientation: forward

Symbol	Name	Function Class
Clcn6	chloride channel, voltage-sensitive 6	1964 bp downstream
Gm13054	predicted gene 13054	within coordinates
Nppa	natriuretic peptide type A	221 bp downstream
Rr407043	regulatory region 407043	735 bp distal
Rr604546	regulatory region 604546	1563 bp distal
Rr604547	regulatory region 604547	574 bp distal
Tssr40239	transcription start site region 40239	1654 bp downstream
Tssr40240	transcription start site region 40240	1541 bp downstream
Tssr40241	transcription start site region 40241	1184 bp downstream
Tssr40242	transcription start site region 40242	957 bp downstream
Tssr40243	transcription start site region 40243	491 bp downstream
Tssr40244	transcription start site region 40244	288 bp downstream
Tssr44568	transcription start site region 44568	220 bp upstream