rs27631551 SNP Detail

Summary

• ID
  rs27631551
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148087123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTATGGGCA AGTGTGAATG
  GAGGGTGGGT TAAGCAGCTG AGAGGAGGAA GGTTTACAGG CTGATGGGTG GCCAGTTCAA
  ACGATTTGTG GGCTACCCCA CTGCTGCGTC ACCACCTATC CACGTGTATC ACTCGGTGCT
  GGAGATCAAA CTCAGGGAGC CAGAGGCATT TGAAAATAGC CACAATCTCC CTAACACAGG
  R
  CTGTGGAGCT TCAACTTGTA CGTTGCGTGG AGGAGAGAAC CACCAGGAAA CATGCAGTAC
  CTTATTTACT TTTAGTTTAT GTAGCTTTGG CTGGCCTCAG ACTCTAGGAG ACCTGCCTTG
  CTACATTACC AAGTCTGGCT AAGGTGCAGT GTTTTTATAC CAGCTTGTGA AAGGCACTGC
  TCTAAGCAGA GAACACATTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37806187	NES09108430	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27631551					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37806187	NES09108430	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148087123 () rs orientation: forward

Symbol	Name	Function Class
Clcn6	chloride channel, voltage-sensitive 6	1593 bp downstream
Gm13054	predicted gene 13054	within coordinates
Nppa	natriuretic peptide type A	592 bp downstream
Rr407043	regulatory region 407043	1106 bp distal
Rr604546	regulatory region 604546	1934 bp distal
Rr604547	regulatory region 604547	945 bp distal
Rr604548	regulatory region 604548	1743 bp proximal
Tssr40240	transcription start site region 40240	1912 bp downstream
Tssr40241	transcription start site region 40241	1555 bp downstream
Tssr40242	transcription start site region 40242	1328 bp downstream
Tssr40243	transcription start site region 40243	862 bp downstream
Tssr40244	transcription start site region 40244	659 bp downstream
Tssr44568	transcription start site region 44568	591 bp upstream