rs27630205 SNP Detail

Summary

• ID
  rs27630205
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:144232148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGATAGAA ACCTTGGCAT
  ATAAAAATGC AAATACCTAA TGTAGTGGTA GTGAAGTTAA TAGACCATTA AGGGCAAAAG
  CAGCACCTAT GGATGACTGG ATAAGAGATA TGACTCATGT TGATTGAGAG GGGTTGGAGT
  GATAGGCAGA CTGGGTAAGA AACATTCCTG GGGCACGGGG CAAGTGGAAC GTCAAGACAT
  R
  TATTACTTCG ACTACACTCC CAAAAGGTCT TTTGATGATG AAGTCAAAGC AAACAAGATG
  AGAATCGGTC TCTAGTGATT AAAGTTGAGA GTCATATCGA TGCCATTGTT TGAGTTTAAT
  GGTGAATATC AATGTCCAGG CATATTTTCC AGAGTAATGG GTATGAATGA CTCATTTCTC
  TTCTCTTTCT TCCAATTCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37801039	NES09129126	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27630205					SNP	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37801039	NES09129126	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144232148 () rs orientation: forward

Symbol	Name	Function Class
Gm52990	predicted gene, 52990	within coordinates
Rr604229	regulatory region 604229	1130 bp proximal