rs27622663 SNP Detail

Summary

• ID
  rs27622663
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:172743928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAAGTCCC TGCAAGACAT
  CTGAGTTGCA GCTGAGAATG GGGAGTTTCT GTGTCAATGT TGTTGGTGGT GGCTGGAAGG
  GAGGGAGAAT CTGGGTGGTT GCCACACTCT TAAAGAGATA CCACTAAAAG TGTTCTCAAA
  GCACACATGG GGGTGTAGGC CTACAGTCCC AACTACTAGG ACAATTTCAA GTTCAAGGCC
  R
  CCTGTGCAAT CTGGATAGAG TCTGCCGCAA AATGAAAATG AGGGGTGGGA GGAGATTGGT
  TTGTGTGCTG TGGGGAGGGG TGGTGGTGAG GGAGGGTAGC TCAGTAGTAG AGCACATAAC
  AGACTCCAGG CTCTTGAGTG CAAGATTCAG AATTGAGGGG GGGTTCCCCA ATATCATAGC
  CTGAGACTCA GCTGGAGCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37825987	NES08714897	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	G	G		G	G	G	G		G	G	A	G		G
ss45330452	mCV22951501	ABI	CRAMUS_MOUSE	f	SNP	A	A					G		G
ss148325374	ENSMUSSNP3061079	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							G
ss320620740	CHEV_2_172727636	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27622663					SNP	A	A	A	G	G	G	G	G	G	G	G	A	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37825987	NES08714897	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172743928 () rs orientation: forward

Symbol	Name	Function Class
Bmp7	bone morphogenetic protein 7	Intron
Rr571767	regulatory region 571767	within coordinates
Rr571768	regulatory region 571768	1095 bp distal
Rr571769	regulatory region 571769	1135 bp proximal
Tssr27952	transcription start site region 27952	149 bp upstream