rs27602070 SNP Detail

Summary

• ID
  rs27602070
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148216477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTGA AGCTATCACA TGACCATGGC
  Y
  GGCACAGAAC AGCTTGGTGA GAAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37805493	NES09108398	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	T		C	T	C	T		C	T	T	T		T
ss45629831	mCV24936165	ABI	CRAMUS_MOUSE	f	SNP		C					C		T
ss147994023	ENSMUSSNP1055566	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
ss321417538	CHEV_4_147506129	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27602070					SNP	C	C	T	C	C	T	C	C	T	C	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805493	NES09108398	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148216477 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15291	CpG island 15291			228 bp distal
Draxin	dorsal inhibitory axon guidance protein			1322 bp upstream
Mad2l2	MAD2 mitotic arrest deficient-like 2			Intron
				Noncoding-Transcript-Variant
Rr604596	regulatory region 604596			1333 bp distal
Rr604597	regulatory region 604597			1912 bp distal
Rr604598	regulatory region 604598			1095 bp distal
Rr604599	regulatory region 604599			within coordinates
Tssr1378	transcription start site region 1378			1157 bp downstream
Tssr40251	transcription start site region 40251			1248 bp downstream
Tssr40252	transcription start site region 40252			1190 bp downstream
Tssr40253	transcription start site region 40253			1125 bp downstream
Tssr44585	transcription start site region 44585			1371 bp upstream
Tssr44586	transcription start site region 44586			1348 bp upstream
Tssr44587	transcription start site region 44587			1314 bp upstream