rs27602066 SNP Detail

Summary

• ID
  rs27602066
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148216942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATTGGGCA GTAGCCTGGT
  GTGCATGGCC AGTAGATGCC CCTTGGAGGC AGTCCCAAAT GTTGCTCTGC CTGTTACCCA
  AGTGTGGGAC TCTGTTCCTC CAGGTTCTTC CAAGAGTGAC TCAGGAGAGG ACTAGGCTCC
  TACCCCATCC AGATTATGGT GACGTGGGGC CTCGGTTTCC CTATCTGTAA GATGGGTCAG
  Y
  TGATTGGCCA AAGCAGATCC AAATGTCCAT CAGCAGATGA GAGTACAAAC ACACTGTGGT
  CCTTCAGGAG AAGGGGATGT TAACTGGTCC TAAAAAGGAA TTCAAGAACA GCAGAGAGGC
  CCAACATGTA AAAATGCGTG ATGCTAAGCC TGACCACCTG CATTCGAATC CCAAGGCCCA
  CATGTAAGGA AAGTAGTGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37805489	NES09108402	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27602066					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805489	NES09108402	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148216942 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Draxin	dorsal inhibitory axon guidance protein			1787 bp upstream
Mad2l2	MAD2 mitotic arrest deficient-like 2			Intron
				Noncoding-Transcript-Variant
Rr604596	regulatory region 604596			1798 bp distal
Rr604598	regulatory region 604598			1560 bp distal
Rr604599	regulatory region 604599			within coordinates
Tssr1378	transcription start site region 1378			1622 bp downstream
Tssr40251	transcription start site region 40251			1713 bp downstream
Tssr40252	transcription start site region 40252			1655 bp downstream
Tssr40253	transcription start site region 40253			1590 bp downstream
Tssr44585	transcription start site region 44585			1836 bp upstream
Tssr44586	transcription start site region 44586			1813 bp upstream
Tssr44587	transcription start site region 44587			1779 bp upstream