rs27576595 SNP Detail

Summary

• ID
  rs27576595
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138188481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTGCCTGAA GTCTTCCTTC TTTGGATGGG AGCCATGGGG
  CTGACTTGTC AAGGGGAGGG ATCAGCTTAG GCCTCTGCAT AGGTCACTTC CTTAGACAAG
  M
  AGACCTCAGG CTTCATTTAG TGAGTACTGA TTTCGTGCCT GCCTTGTGTT AACCTGGTAT
  AATGAAGAAC AAACTAGAGG CTTGTCCTGG GTTCAAAAAT                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37768124	NES09140795	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	C	C	C	C	A	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27576595					SNP	A	A	A	A	C	C	C	C	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37768124	NES09140795	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138188481 () rs orientation: forward

Symbol	Name	Function Class
Camk2n1	calcium/calmodulin-dependent protein kinase II inhibitor 1	1044 bp downstream
Gm70162	predicted gene, 70162	1032 bp downstream
Rr2025	regulatory region 2025	1657 bp proximal
Rr602934	regulatory region 602934	1061 bp distal
Rr602935	regulatory region 602935	1244 bp distal
Rr602936	regulatory region 602936	1511 bp proximal
Rr602937	regulatory region 602937	1932 bp proximal
Tssr44170	transcription start site region 44170	1238 bp upstream