rs27576594 SNP Detail

Summary

• ID
  rs27576594
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138189159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGACC CACTTTAACA TAAAATACCA
  K
  TGAGACTCTA GACTAGTTTA AGGTG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37768123	NES09140753	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	T	T	T	T		G	G	T	T		T
ss321373838	CHEV_4_138017763	CHEVERUD	SCREENING_POP	f	SNP									T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27576594					SNP	G	G	G	G	T	T	T	T	T	G	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37768123	NES09140753	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138189159 () rs orientation: forward

Symbol	Name	Function Class
Camk2n1	calcium/calmodulin-dependent protein kinase II inhibitor 1	1722 bp downstream
Gm70162	predicted gene, 70162	354 bp downstream
Rr2025	regulatory region 2025	979 bp proximal
Rr602934	regulatory region 602934	1739 bp distal
Rr602935	regulatory region 602935	1922 bp distal
Rr602936	regulatory region 602936	833 bp proximal
Rr602937	regulatory region 602937	1254 bp proximal
Rr602938	regulatory region 602938	1327 bp proximal
Rr602939	regulatory region 602939	1863 bp proximal
Tssr44170	transcription start site region 44170	1916 bp upstream