rs27556546 SNP Detail

Summary

• ID
  rs27556546
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131989235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGGCCTTC GGTCCTAGAA
  AGGCAGTGTT GGAGAAGTCG CGGGAGGCCC CAGGGGACTG AATAAGGTTT AGATGCAGAG
  GTCATCTCGC CCTGACTCTT GTGGAGGACT AGGGCTTTTC TTTCTCCAAA TCCTCTTTAT
  TGACGCTTAC AATTTATCAG GATTTCAGGT TACCAATGTG GAATGAAAAG ATGCTGCTGA
  R
  CATAGATAGT AACCCCTTCC CGCGTCCAAA CCATGGCTCT TTGCGCAGGT TTTCCTGCTT
  GTCCGGGTTC GGAGTTCAAA TTTGAACTTC CTTGGAACCG GTACAACAAC TGTGCAGTGA
  CTTGACAACT CTAAGCCACC TATTTCCCGA AAGGTACATG TCGTTCATGT ACAATGAAAT
  GATACTTGAA AAGTACTTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37746957	NES09166270	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A		A	G	G	G		G
ss321331992	CHEV_4_131817839	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27556546					SNP	G	G	G	G	G	G	A	G	G	A	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37746957	NES09166270	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131989235 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14953	CpG island 14953	82 bp distal
Gm28874	predicted gene 28874	within coordinates
Gmeb1	glucocorticoid modulatory element binding protein 1	322 bp upstream
Rr600911	regulatory region 600911	1386 bp distal
Rr600912	regulatory region 600912	414 bp distal
Rr600913	regulatory region 600913	within coordinates
Rr600914	regulatory region 600914	944 bp proximal
Rr600915	regulatory region 600915	1139 bp proximal
Tssr39362	transcription start site region 39362	1407 bp downstream
Tssr39363	transcription start site region 39363	1386 bp downstream
Tssr43650	transcription start site region 43650	352 bp upstream
Tssr43651	transcription start site region 43651	302 bp upstream