rs27556543 SNP Detail

Summary

• ID
  rs27556543
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131989810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACAATTCC TGTCTAGCCT
  GGTCTACATA GTGGGTTCTA GGCCAGCTGT GGCTACATAA TGAGACCTTG TCTCAAAAAA
  AAAAAGCAAG CCAAACGTAG AGATGAGGGG TGTGAGGAGG GAAGTAGGTC GGTAGGTAGA
  ACACGTGCAG AAGACCCACA AGGGTTATTT CCCATCTTTC TTCCTATAGA CATTGTGTTG
  W
  ATCTGTCTTC TTTGCTTCCA AAGGGCAGGT TGTGGGCTGT GTGTGTGTGT GTGTGTAGAG
  ATGGCACGTT GGGTGCAGGC TCCTGACCAC CTGAGTTCCA CCACTCGAAC CTACATAGTG
  ATTTTTTTTT TTTTTTTTTT TTTAATTGAG ACAGGGTTTT CTGTGTAGCC CTGGCTGTCC
  TGGAATTCAC TTTGTAGACC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37746954	NES09166197	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	A		A	T	T	T		T
ss321332000	CHEV_4_131818414	CHEVERUD	SCREENING_POP	f	SNP											T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27556543					SNP	T	T	T	T	T	T	A	T	T	A	T	A	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37746954	NES09166197	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131989810 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14953	CpG island 14953	657 bp distal
Gm28874	predicted gene 28874	within coordinates
Gmeb1	glucocorticoid modulatory element binding protein 1	897 bp upstream
Rr600911	regulatory region 600911	1961 bp distal
Rr600912	regulatory region 600912	989 bp distal
Rr600913	regulatory region 600913	407 bp distal
Rr600914	regulatory region 600914	369 bp proximal
Rr600915	regulatory region 600915	564 bp proximal
Tssr39362	transcription start site region 39362	1982 bp downstream
Tssr39363	transcription start site region 39363	1961 bp downstream
Tssr43650	transcription start site region 43650	927 bp upstream
Tssr43651	transcription start site region 43651	877 bp upstream