rs27552760 SNP Detail

Summary

• ID
  rs27552760
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:139187543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTG GCCACCAATC CAGCCCTGCG
  R
  CACATCCTCG TCTCCCAGGG CCTCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37764681	NES09128831	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	G	A	G		G	G	G		A	A	G	G		G
ss45618724	mCV23716670	ABI	CRAMUS_MOUSE	f	SNP		A	A					A	G
ss147671896	ENSMUSSNP4868799	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						G
ss321381507	CHEV_4_139016147	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27552760					SNP	A	A	A	G	G	A	G	A	G	G	G	G	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37764681	NES09128831	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139187543 () rs orientation: forward

Symbol	Name	Function Class
Rr603222	regulatory region 603222	within coordinates
Tssr1357	transcription start site region 1357	29 bp upstream
Ubr4	ubiquitin protein ligase E3 component n-recognin 4	Coding-Synonymous