rs27552349 SNP Detail

Summary

• ID
  rs27552349
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141810071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATAC CAACGTCCTG ATGACTACAC
  M
  AGTACCCACT TTCGTCTCTC TCTAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	CAST/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37783574	NES09129808	PERLEGEN	MM_PANEL2	f	SNP	A			C	A	A	A	C	A	A
ss45719408	mCV22555394	ABI	CRAMUS_MOUSE	f	SNP		A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	CAST/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27552349					SNP	A	A	C	C	A	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37783574	NES09129808	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141810071 () rs orientation: forward

Symbol	Name	Function Class
Rr603987	regulatory region 603987	367 bp distal
Rr603988	regulatory region 603988	1048 bp proximal
Rr603989	regulatory region 603989	1540 bp proximal
Rr603990	regulatory region 603990	1591 bp proximal
Tmem51	transmembrane protein 51	Intron
Tmem51os1	Tmem51 opposite strand 1	1538 bp upstream
Tssr44419	transcription start site region 44419	1437 bp downstream
Tssr44420	transcription start site region 44420	1461 bp downstream
Tssr44421	transcription start site region 44421	1767 bp downstream
Tssr44422	transcription start site region 44422	1905 bp downstream