rs27552348 SNP Detail

Summary

• ID
  rs27552348
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141810449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTTT GAATGACAGG TCTCAGTGGG
  R
  AAGCTCTTGA CCCTTCTCTT AAGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37783573	NES09129809	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	G	G		G	G	G	A		G	G	A	G		G
ss45723041	mCV22555393	ABI	CRAMUS_MOUSE	f	SNP		G	A					A
ss321392522	CHEV_4_141639053	CHEVERUD	SCREENING_POP	f	SNP													G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27552348					SNP	G	G	A	G	A	G	G	A	G	G	G	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37783573	NES09129809	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141810449 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15252	CpG island 15252	620 bp proximal
Rr603987	regulatory region 603987	745 bp distal
Rr603988	regulatory region 603988	670 bp proximal
Rr603989	regulatory region 603989	1162 bp proximal
Rr603990	regulatory region 603990	1213 bp proximal
Rr603991	regulatory region 603991	1821 bp proximal
Tmem51	transmembrane protein 51	Intron
Tmem51os1	Tmem51 opposite strand 1	1160 bp upstream
Tssr44419	transcription start site region 44419	1059 bp downstream
Tssr44420	transcription start site region 44420	1083 bp downstream
Tssr44421	transcription start site region 44421	1389 bp downstream
Tssr44422	transcription start site region 44422	1527 bp downstream