rs27552344 SNP Detail

Summary

• ID
  rs27552344
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141810840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGCA AACTTACTAT GTCGTCGGTA
  W
  TTTGTTCTCC CCTGCACCCT GTAAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37783569	NES09129817	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	T	A	T		A	A	A	T	T	A	T	A	A
ss45687912	mCV22555383	ABI	CRAMUS_MOUSE	f	SNP		A	T					T		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27552344					SNP	A	A	T	T	T	A	T	T	A	A	A	T	T	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37783569	NES09129817	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141810840 () rs orientation: forward

Symbol	Name	Function Class
Rr603987	regulatory region 603987	1136 bp distal
Rr603988	regulatory region 603988	279 bp proximal
Rr603989	regulatory region 603989	771 bp proximal
Rr603990	regulatory region 603990	822 bp proximal
Rr603991	regulatory region 603991	1430 bp proximal
Tmem51	transmembrane protein 51	Intron
Tmem51os1	Tmem51 opposite strand 1	769 bp upstream
Tssr44419	transcription start site region 44419	668 bp downstream
Tssr44420	transcription start site region 44420	692 bp downstream
Tssr44421	transcription start site region 44421	998 bp downstream
Tssr44422	transcription start site region 44422	1136 bp downstream