rs27552343 SNP Detail

Summary

• ID
  rs27552343
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141811059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACAC AATGTCCACC CCTACATTAC
  W
  AGGACAGAGG CTCCCACGGC CGGCT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37783568	NES09129784	PERLEGEN	MM_PANEL2	f	SNP	A	T	A	T	A	A		A	A	A	T		A	A	T	A		A
ss45620310	mCV22555375	ABI	CRAMUS_MOUSE	f	SNP	A	T					T		A
ss147748438	ENSMUSSNP6489313	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							A
ss321392526	CHEV_4_141639663	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27552343					SNP	A	T	A	T	A	A	T	A	A	A	T	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37783568	NES09129784	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141811059 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15252	CpG island 15252	10 bp proximal
Rr603987	regulatory region 603987	1355 bp distal
Rr603988	regulatory region 603988	60 bp proximal
Rr603989	regulatory region 603989	552 bp proximal
Rr603990	regulatory region 603990	603 bp proximal
Rr603991	regulatory region 603991	1211 bp proximal
Tmem51	transmembrane protein 51	Intron
Tmem51os1	Tmem51 opposite strand 1	550 bp upstream
Tssr44419	transcription start site region 44419	449 bp downstream
Tssr44420	transcription start site region 44420	473 bp downstream
Tssr44421	transcription start site region 44421	779 bp downstream
Tssr44422	transcription start site region 44422	917 bp downstream