rs27552341 SNP Detail

Summary

• ID
  rs27552341
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141811374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCGG CGCGAGGACG CAGACTCACC
  Y
  CGAAGGCAAA GGGCCACGCT TGGTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37783566	NES09129786	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C	T	T	T	C	C	T	C	T	T
ss147748446	ENSMUSSNP7240151	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27552341					SNP	T	T	C	C	C	T	C	T	T	T	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37783566	NES09129786	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141811374 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15252	CpG island 15252			within coordinates
Rr603987	regulatory region 603987			1670 bp distal
Rr603988	regulatory region 603988			within coordinates
Rr603989	regulatory region 603989			237 bp proximal
Rr603990	regulatory region 603990			288 bp proximal
Rr603991	regulatory region 603991			896 bp proximal
Tmem51	transmembrane protein 51			Intron
				mRNA-UTR
				Splice-Site
Tmem51os1	Tmem51 opposite strand 1			235 bp upstream
Tssr44419	transcription start site region 44419			134 bp downstream
Tssr44420	transcription start site region 44420			158 bp downstream
Tssr44421	transcription start site region 44421			464 bp downstream
Tssr44422	transcription start site region 44422			602 bp downstream