rs27552336 SNP Detail

Summary

• ID
  rs27552336
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141812439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCGGGTGTC AGAGGATTCG
  GCTGGGGTTA AAAGGCGCCT CCTACTGGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG ATTGAAAGTC
  CGCTTTCTGG ATAAACCGCA CAGCTTGGCT GCAGCCAAGT TCACTTGGAA TTCCTGGGTA
  Y
  ATACTTCCCG AGCTGTATAC TTCCGGAGTC CAATCACACT CTATACACTG CTACTTCTTA
  TTTGCACTGA TAGAAAGGGA TTAATTGGGA AATGGCTTGT GATTTGGGAA GTGAAAAGGG
  CATTTTTGGA AACAGGTTCG GAGCGCAAGA GTAACTGCTA ACATTTCACG TCCTTACTCT
  GAACCCGGCC TGGGTGACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37783561	NES09129759	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27552336					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37783561	NES09129759	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141812439 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15252	CpG island 15252	318 bp distal
Rr603988	regulatory region 603988	778 bp distal
Rr603989	regulatory region 603989	807 bp distal
Rr603990	regulatory region 603990	within coordinates
Rr603991	regulatory region 603991	148 bp distal
Tmem51	transmembrane protein 51	824 bp upstream
Tmem51os1	Tmem51 opposite strand 1	within coordinates
Tssr44419	transcription start site region 44419	909 bp upstream
Tssr44420	transcription start site region 44420	866 bp upstream
Tssr44421	transcription start site region 44421	565 bp upstream
Tssr44422	transcription start site region 44422	445 bp upstream