rs27552334 SNP Detail

Summary

• ID
  rs27552334
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141812739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTTT GCATTTCACC CTGACAGACT
  Y
  GAGGCAGGTC ATTCAGAGAG TCCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37783559	NES09129761	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C	C	C	T	C	C	C	C	C	T
ss45587139	mCV22555356	ABI	CRAMUS_MOUSE	f	SNP	T	T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27552334					SNP	T	T	C	C	C	T	C	C	C	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37783559	NES09129761	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141812739 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15252	CpG island 15252	618 bp distal
Rr603988	regulatory region 603988	1078 bp distal
Rr603989	regulatory region 603989	1107 bp distal
Rr603990	regulatory region 603990	within coordinates
Rr603991	regulatory region 603991	448 bp distal
Tmem51	transmembrane protein 51	1124 bp upstream
Tmem51os1	Tmem51 opposite strand 1	within coordinates
Tssr44419	transcription start site region 44419	1209 bp upstream
Tssr44420	transcription start site region 44420	1166 bp upstream
Tssr44421	transcription start site region 44421	865 bp upstream
Tssr44422	transcription start site region 44422	745 bp upstream