rs27552333 SNP Detail

Summary

• ID
  rs27552333
• Variation Type
  SNP
• Alleles
  C/G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141812856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCAT CTAATCTAGC TGGGCAGGTC
  B
  GTCTCTTCCA AGCGGGGAGA GACCA                                      
  
  B = C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J
ss37783558	NES09129762	PERLEGEN	MM_PANEL2	f	SNP			T	C	T	C		C		C	T
ss45664240	mCV22555355	ABI	CRAMUS_MOUSE	f	SNP	G	G	T				G
ss147748481	ENSMUSSNP2486199	ENSEMBL	ENSEMBL_Sanger	f	SNP			T				G
ss321392532	CHEV_4_141641460	CHEVERUD	SCREENING_POP	f	SNP									C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J
rs27552333					SNP	G	G	T	C	T	C	G	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37783558	NES09129762	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141812856 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15252	CpG island 15252	735 bp distal
Rr603988	regulatory region 603988	1195 bp distal
Rr603989	regulatory region 603989	1224 bp distal
Rr603990	regulatory region 603990	within coordinates
Rr603991	regulatory region 603991	565 bp distal
Tmem51	transmembrane protein 51	1241 bp upstream
Tmem51os1	Tmem51 opposite strand 1	within coordinates
Tssr44419	transcription start site region 44419	1326 bp upstream
Tssr44420	transcription start site region 44420	1283 bp upstream
Tssr44421	transcription start site region 44421	982 bp upstream
Tssr44422	transcription start site region 44422	862 bp upstream