rs27552331 SNP Detail

Summary

• ID
  rs27552331
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141813075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGACCAAGG ACTTAACAGC
  CAAAGCTGAG CTGAGAGGAA AACTAAAAGA GTCGCATCGC ACACTGTCCA ACCTTCTGCC
  TTAATGTGTT TCTTTTTTCT TACCTCTTCC CACCCAGGAG CTGCCTGCCT CCTTATCCCA
  CCACGCTGCT ACCTCACCAG GACCGGAGGC ATGTGTCCTT AGGGGAAACG ATCCAAAGAT
  R
  CGAATCTCAA ACAGTGACTT CTATTACCTA TTGTGCTGTC TAGTTTTATG TGAGCTTGAC
  ACAAGTTATA GTTATATTTG TTGAGGGATT CTCAACTGAG AAAATGCCTC CATAAGATCA
  GGCTGTGGGC AAGTCTGTGG GGCATTTTCT TAATTAGTGA TTAGTAGGGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37783556	NES09129764	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	A	G		G	G	G	G	G	G	G	G	G
ss45645807	mCV22555353	ABI	CRAMUS_MOUSE	f	SNP	A	G					G
ss147748492	ENSMUSSNP2932032	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27552331					SNP	A	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37783556	NES09129764	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141813075 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15252	CpG island 15252	954 bp distal
Rr603988	regulatory region 603988	1414 bp distal
Rr603989	regulatory region 603989	1443 bp distal
Rr603990	regulatory region 603990	45 bp distal
Rr603991	regulatory region 603991	784 bp distal
Tmem51	transmembrane protein 51	1460 bp upstream
Tmem51os1	Tmem51 opposite strand 1	within coordinates
Tssr44419	transcription start site region 44419	1545 bp upstream
Tssr44420	transcription start site region 44420	1502 bp upstream
Tssr44421	transcription start site region 44421	1201 bp upstream
Tssr44422	transcription start site region 44422	1081 bp upstream