rs27552329 SNP Detail

Summary

• ID
  rs27552329
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141813647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTGA ATCCTGTGCT GCAAACATCC
  R
  ACCTTCACAG AGCACTAAGA GGAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37783554	NES09129731	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	G	A	A	A	A		G	A	A	A		A
ss321392535	CHEV_4_141642251	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27552329					SNP	A	A	G	A	A	G	A	A	A	A	G	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37783554	NES09129731	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141813647 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15252	CpG island 15252	1526 bp distal
Rr603988	regulatory region 603988	1986 bp distal
Rr603990	regulatory region 603990	617 bp distal
Rr603991	regulatory region 603991	1356 bp distal
Tmem51os1	Tmem51 opposite strand 1	within coordinates
Tssr44421	transcription start site region 44421	1773 bp upstream
Tssr44422	transcription start site region 44422	1653 bp upstream