rs27552328 SNP Detail

Summary

• ID
  rs27552328
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141813655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAACCCTAG CCAGAGCATC TATTATCACA GGACATCGGG
  GTTGGGGTTG GATAATGGAT GCTGTCTATT GAATCCTGTG CTGCAAACAT CCAACCTTCA
  Y
  AGAGCACTAA GAGGAAGATC TTTCTGACTT TTCAGGGGAG GCCTCAAAAA TGAGAAGATT
  CTATTCTTGG ATCTGCCAGC ACTGGGGCTG TCTCTGCAGC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37783553	NES09129732	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27552328					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37783553	NES09129732	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141813655 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15252	CpG island 15252	1534 bp distal
Rr603988	regulatory region 603988	1994 bp distal
Rr603990	regulatory region 603990	625 bp distal
Rr603991	regulatory region 603991	1364 bp distal
Tmem51os1	Tmem51 opposite strand 1	within coordinates
Tssr44421	transcription start site region 44421	1781 bp upstream
Tssr44422	transcription start site region 44422	1661 bp upstream