rs27545823 SNP Detail

Summary

• ID
  rs27545823
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138008254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGACAGAC AGACAGATAC
  GTACATATAC ATATTAAAGC CTGACTCGCC AGTTGCCCTC TGCCCCTTTT CCCACCTTTT
  TTCCCATACA CTCCTTCGCA CTCCCTCCCT GACATCAATG CTGACTGTGC CCAGGTCTCC
  TGGGTCTTCC CCCGCTCCCT CCCCCTGGTA CTCACTGCTG AAGCTTTCAG GGCCTGGCTT
  Y
  CTTTCCTCTC CTCTCCATCC GCTGTCCCCA TCACCCTAGA CATCCCAGCA TAGGTCTGGA
  GCTGCTCTGG TCTTTCCACT CTACCGCTCT GTCTGGAAGC TCTTCCCCCA TCTCTGCCTG
  GCTCTCTCCT CTCCCCTGAT TCTGGCTCCA TCTGCTCTCC ACTGAGGTCT TCCTGAGGTC
  AGCATCGGGG CACTCAGCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37768646	NES09146107	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27545823					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37768646	NES09146107	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138008254 () rs orientation: forward

Symbol	Name	Function Class
Kif17	kinesin family member 17	Intron
Rr398625	regulatory region 398625	1995 bp upstream
Rr602860	regulatory region 602860	1841 bp proximal