rs27545821 SNP Detail

Summary

• ID
  rs27545821
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138008774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCGGTGACT GGTGGATTGC
  GTTTTACAGA GGGGCACATT TATGCCTGGT CCCTGGGTGC TCACCCTCCG CTTCTCCTGT
  CTCTTTCTCT CCAGCCCTGC TGTCCACTCA GACACCCCCA GGCCCAGTCC AGTCTGAGGA
  GAAGCTGCTG TCCCCAACTA CTGTCCAGCA GGACACGGAG GCTGAGAAGC AGTTGATCCG
  R
  GAGGTGAGAC CCCAGTGAGC TGCCAATGTG AAGGAGCGGA TGTCCCAGGG AGAGCCAGTA
  CCTGCAGGGT GTCATCCTGC TTCACTTCCG TGGGCTTGGC ACCATGGTGC CCTCTTCTTC
  TGAGGAAGCT GGGGCTCAAA GACTTTTCCA AAGTTTTAGG GAACACAGGA GTATCAAAGA
  GTTGAATTCA GCGGCACCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37768644	NES09146109	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27545821					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37768644	NES09146109	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138008774 () rs orientation: forward

Symbol	Name	Function Class
Kif17	kinesin family member 17	Coding-Synonymous
Rr398625	regulatory region 398625	1475 bp upstream
Rr602860	regulatory region 602860	1321 bp proximal
Rr602861	regulatory region 602861	1575 bp proximal
Rr602862	regulatory region 602862	1617 bp proximal