rs27545820 SNP Detail

Summary

• ID
  rs27545820
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138009626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTAGCTC TGCCTGGTGG
  CTTGGTGTTC AGAGGTCCCT GTGAGGAACT GGTTGTTCCT GAGGAGAATG CTGACACTAG
  GCAGGAGCAG TTTTGGGGAG CTCTAGCCTG GCTCCCAAGC CTACAGCTGG ATCCCTTGCC
  TCTCAGTTAT AATCTCAATT AGGGGCCAGA CCTCGAAACT CTTGTCAGGA TGTTGGACAA
  R
  GAGCCTGCTT TGGTGGCTGC AGTCCTGAGA GCTCTGCCCT TTGGGACCGT CTAGGGTAGG
  TCTGGGTACC AAGTCCGCCT CTAGGACCCA AACCTTGCCC TTAGTGGAGG TGGCAGTAAG
  AAGAGACAGA CCCTTGGCCA AGCAGTGGTG GCACATACTT GCAGTCCCAG CACTACAGAG
  GCAGAGGTAG GCAGATCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37768643	NES09146069	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27545820					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37768643	NES09146069	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138009626 () rs orientation: forward

Symbol	Name	Function Class
Kif17	kinesin family member 17	Intron
Rr398625	regulatory region 398625	623 bp upstream
Rr602860	regulatory region 602860	469 bp proximal
Rr602861	regulatory region 602861	723 bp proximal
Rr602862	regulatory region 602862	765 bp proximal