rs27545818 SNP Detail

Summary

• ID
  rs27545818
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138009703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGCAGGAG CAGTTTTGGG
  GAGCTCTAGC CTGGCTCCCA AGCCTACAGC TGGATCCCTT GCCTCTCAGT TATAATCTCA
  ATTAGGGGCC AGACCTCGAA ACTCTTGTCA GGATGTTGGA CAAAGAGCCT GCTTTGGTGG
  CTGCAGTCCT GAGAGCTCTG CCCTTTGGGA CCGTCTAGGG TAGGTCTGGG TACCAAGTCC
  K
  CCTCTAGGAC CCAAACCTTG CCCTTAGTGG AGGTGGCAGT AAGAAGAGAC AGACCCTTGG
  CCAAGCAGTG GTGGCACATA CTTGCAGTCC CAGCACTACA GAGGCAGAGG TAGGCAGATC
  TCTGAGTTCA AGGCTAGCCA GGTCTACAGA GTGAGTTCTA AGACAGCCAA GGCTACACAG
  AGAAACGCTA TATTGAACAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37768641	NES09146071	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27545818					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37768641	NES09146071	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138009703 () rs orientation: forward

Symbol	Name	Function Class
Kif17	kinesin family member 17	Intron
Rr398625	regulatory region 398625	546 bp upstream
Rr602860	regulatory region 602860	392 bp proximal
Rr602861	regulatory region 602861	646 bp proximal
Rr602862	regulatory region 602862	688 bp proximal