rs27545817 SNP Detail

Summary

• ID
  rs27545817
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138009755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGA GGTGGCAGTA AGAAGAGACA
  S
  ACCCTTGGCC AAGCAGTGGT GGCAC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37768640	NES09146072	PERLEGEN	MM_PANEL2	f	SNP	G		C	G	C	G	C		G	C	C	C		G		G	C	G		C
ss45600782	mCV24057783	ABI	CRAMUS_MOUSE	f	SNP		G	C					G		C
ss147639122	ENSMUSSNP1161900	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C							C					G
ss321371995	CHEV_4_137838359	CHEVERUD	SCREENING_POP	f	SNP													C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27545817					SNP	G	G	C	G	C	G	C	G	G	C	C	C	C	G	G	G	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37768640	NES09146072	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138009755 () rs orientation: forward

Symbol	Name	Function Class
Kif17	kinesin family member 17	Intron
Rr398625	regulatory region 398625	494 bp upstream
Rr602860	regulatory region 602860	340 bp proximal
Rr602861	regulatory region 602861	594 bp proximal
Rr602862	regulatory region 602862	636 bp proximal